To the extent that people stop training the waza system, because they have decided it is fake and trickery, then they start to stop Uke all the time, then it becomes damaging to the training process as O Sensei described it to Saotome Sensei, as he described in his books and videos, .
Many of us have explicitly said and will continue to say: we are continuing to get on the mat and train as nage and uke, doing waza. As uke, we are not resisting, we are not tanking. We are (trying to at least, depending on our skill level!) providing the committed, sincere attack nage needs in order to do the technique the instructor has asked us to do. As nage , we are not standing there like blocks, we are (again, at least striving to dep. on skill level) entering, establishing a connection to uke's center, achieving kuzushi in order to do the technique the instructor has asked us to do.
Making use of the internal strength training is no different from a Ki Society dojo making use of those tools IN SERVICE TO WAZA. We are doing aikido. I have no idea why you think this is not the case.